The CCTC can only be claimed by one parent. (the one that has the majority of physical custody) Even if they swap the claim for the deduction every year, the mom is "most likely: allowed the tax credit for child care expenses for the full amount that she has paid. (The amount of the checks that she has given to you) Where the money is coming from or if she is being reimbursed doesn't "really" come into play.
In your current situation I would only issue receipts once and advise the father that he would not be receiving receipts in the future.

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